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How to convert bigWig (.bw) files to bedGraph files
Download bigWigToBedGraph tool from UCSC tools page. Type bigWigToBedGraph in.bigWig out.bedGraph to convert the bigWig binary to bedGraph plain text.
Download sequences and annotation files
| Species | Genome | Annotation | |
|---|---|---|---|
| Animals | Human | hg38.fa.gz | hg38.gff3.gz |
| Mouse | mm10.fa.gz | mm10.gff3.gz | |
| Zebrafish | GRCZ11.fa.gz | GRCZ11.gff3.gz | |
| Plants | A. thaliana | TAIR10.fa.gz | TAIR10.gff3.gz |
| Rice | rice.fa.gz | rice.gff3.gz | |
| Bacteria & fungi | Yeast | yeast.fa.gz | yeast.gff3.gz |
| E. coli | ecoli.fa.gz | ecoli.gff3.gz | |
| P. putida | Pputida.fa.gz | Pputida.gff3.gz | |
| Synechococcus | Synechococcus.fa.gz | Synechococcus.gff3.gz | |
| Y.pseudotuberculosis | Y_pseudotuberculosis.fa.gz | Y_pseudotuberculosis.gff3.gz | |
| Virus | HIV | HIV.fa.gz | HIV.gff3.gz |
| Dengue virus | Dengue.fa.gz | Dengue.gff3.gz | |
| ZIKV | ZIKV.fa.gz | ZIKV.gff3.gz | |
| HCV | HCV.fa.gz | HCV.gff3.gz | |
| STMV | STMV.fa.gz | STMV.gff3.gz | |
| CMV | CMV.fa.gz | CMV.gff3.gz | |
| IAV | IAV.fa.gz | IAV.gff3.gz | |
| SARS-CoV-2 | SARS2.fa.gz | SARS2.gff3.gz |