Note: RASP v2.0 includes all data and functionalities of RASP. The original RASP will be permanently discontinued on December 1, 2025. Please visit http://rasp2.zhanglab.net to access RASP v2.0.
Help
How to convert bigWig (.bw) files to bedGraph files
Download bigWigToBedGraph tool from UCSC tools page. Type bigWigToBedGraph in.bigWig out.bedGraph to convert the bigWig binary to bedGraph plain text.
Download sequences and annotation files
| Species | Genome | Annotation | |
|---|---|---|---|
| Animals | Human | hg38.fa.gz | hg38.gff3.gz |
| Mouse | mm10.fa.gz | mm10.gff3.gz | |
| Zebrafish | GRCZ11.fa.gz | GRCZ11.gff3.gz | |
| Plants | A. thaliana | TAIR10.fa.gz | TAIR10.gff3.gz |
| Rice | rice.fa.gz | rice.gff3.gz | |
| Bacteria & fungi | Yeast | yeast.fa.gz | yeast.gff3.gz |
| E. coli | ecoli.fa.gz | ecoli.gff3.gz | |
| P. putida | Pputida.fa.gz | Pputida.gff3.gz | |
| Synechococcus | Synechococcus.fa.gz | Synechococcus.gff3.gz | |
| Y.pseudotuberculosis | Y_pseudotuberculosis.fa.gz | Y_pseudotuberculosis.gff3.gz | |
| Virus | HIV | HIV.fa.gz | HIV.gff3.gz |
| Dengue virus | Dengue.fa.gz | Dengue.gff3.gz | |
| ZIKV | ZIKV.fa.gz | ZIKV.gff3.gz | |
| HCV | HCV.fa.gz | HCV.gff3.gz | |
| STMV | STMV.fa.gz | STMV.gff3.gz | |
| CMV | CMV.fa.gz | CMV.gff3.gz | |
| IAV | IAV.fa.gz | IAV.gff3.gz | |
| SARS-CoV-2 | SARS2.fa.gz | SARS2.gff3.gz |